cellNtestPlot: Number of Tests in Cell Types

In girke-lab/signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

Number of Tests in Cell Types

Description

Bar plot of number of perturbations/compounds tested in cell types where cell types are grouped by 'primary site'.

Usage

cellNtestPlot(refdb)

Arguments

refdb

character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr" when using the pre-generated CMAP/LINCS databases or path to the HDF5 file generated with the build_custom_db function. The details is shown in the 'refdb' argument of the qSig function

Value

Faceted bar plot

Examples

refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch")
cellNtestPlot(refdb)

girke-lab/signatureSearch documentation built on Feb. 21, 2024, 8:32 a.m.