gessResult: Constructor for 'gessResult-class'

In girke-lab/signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

Constructor for gessResult-class

Description

This is a helper function to construct a gessResult object. For detail description, please consult the help file of the gessResult-class.

Usage

gessResult(result, query, gess_method, refdb)

Arguments

result	tibble object containing the GESS results
query	list or a matrix, query signature
gess_method	character(1), name of the GESS method
refdb	character(1), path to the reference database

Value

gessResult object

Examples

gr <- gessResult(result=dplyr::tibble(pert=letters[seq_len(10)], 
                                      val=seq_len(10)), 
                 query=list(up=c("g1","g2"), down=c("g3","g4")),
                 gess_method="LINCS", refdb="path/to/lincs/db")

girke-lab/signatureSearch documentation built on Feb. 21, 2024, 8:32 a.m.