weight.taxo: Define Similarity Matrix
In gjuggler/ape: Analyses of Phylogenetics and Evolution
Description
Usage
Arguments
Value
Author(s)
See Also
Description
weight.taxo computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j], 0 otherwise.
weight.taxo2 computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j] AND y[i] != y[j], 0 otherwise.
The diagonal [i, i] is always set to 0.
The returned matrix can be used as a weight matrix in
Moran.I. x and y may be vectors of
factors.
See further details in vignette("MoranI").
Usage
1
2
weight.taxo(x)
weight.taxo2(x, y)
Arguments
x, y
a vector or a factor.
Value
a square numeric matrix.
Author(s)
Emmanuel Paradis
See Also
gjuggler/ape documentation built on May 17, 2019, 6:03 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
Description
weight.taxo computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j], 0 otherwise.
weight.taxo2 computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j] AND y[i] != y[j], 0 otherwise.
The diagonal [i, i] is always set to 0.
The returned matrix can be used as a weight matrix in
Moran.I. x and y may be vectors of
factors.
See further details in vignette("MoranI").
Usage
1 2 | weight.taxo(x)
weight.taxo2(x, y)
|
Arguments
x, y |
a vector or a factor. |
Value
a square numeric matrix.
Author(s)
Emmanuel Paradis
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.