Man pages for gnyamundanda/sma
Statistical Microarray Analysis
| id2image | Converting an id tag to a Set of Image Coordinates and Vice... |
| init.addinfo | Adding Information to a Data Structure for Multi-slide... |
| init.ctl.index | Generates co-ordinates of spots. |
| init.data | Creating a Data Structure for Multi-slide Microarray... |
| init.grid | Initialization of Grid Parameters |
| init.names | Set and Read the Names of Experimental Data. |
| init.read.exp | Reads the Output of the Computed Statistics |
| is.odd | Determining if a Value is Odd or Even |
| MouseArray | Mouse Gene Expression Data from cDNA microarray |
| na | Basic Statistical Functions for Handling Missing Values |
| plot.bayesian | Plots lodscore vs effect estimate (the output of... |
| plot.confband.lines | Adding Lines Satisfying a Confidence Criterion to the Current... |
| plot.confband.points | Highlights a Set of Points on the Current M vs A Plot |
| plot.confband.text | Add Selected Text to an M vs A Plot |
| plot.cor | Red and Green Color Image of Correlation Matrix |
| plot.mat | Red and Green Color Image of Data Matrix |
| plot.mva | M vs. A Plot |
| plot.print.tip.lowess | M vs. A Plot with print tip lowess lines |
| plot.qq | Histogram and Normal Quantile-Quantile plot |
| plot.qqline | Add Line Going Through the Quantiles of a Q-Q Plot |
| plot.scale.box | Box plots for microarray |
| plot.single.slide | M vs. A Plot |
| plot.smooth.line | Adding Lowess Lines to Current Plot |
| plot.spatial | Spatial Representation of Microarray Spot Statistics |
| plot.svb | Plot of Signal vs. Background |
| plot.t2 | Diagnostic Plots for Two-Sample t-statistics |
| read.genepix | Reading in Data Generated by the Image Analysis Package... |
| read.spot | Reading in Data Generated by the Image Analysis Package Spot |
| rgcolors.func | Red and Green Color Specification |
| sma-internal | Internal sma functions |
| stat.bayesian | Calculates an Odds Ratio of Each Gene in a Multi-slide... |
| stat.bay.est | Calculates an Odds Ratio for Each Gene in a Multi-slide... |
| stat.bwss | Between and Within Group Sum of Squares Calculation |
| stat.Chen | Apply Chen's single slide method |
| stat.ChurSap | Apply Sapir and Churchills single slide method |
| stat.diag.da | Diagonal Discriminant Analysis |
| stat.gnames | Sort Genes According to the Value of a Statistic |
| stat.ma | Calculation of log Intensity Ratios and Average log... |
| stat.Newton | Apply Newtons single slide method |
| stat.norm.exp | Normalization of log Intensity Ratios across slides /... |
| stat.t2 | Two-sample t-statistics |
| write.spot | Writing in Data Generated by the Image Analysis Package Spot |
