Description Usage Arguments Details Author(s) References See Also Examples
Function writes in a data file in a tab delimited table format.
1 | write.spot(x, imageid, batch="output")
|
x |
the object to be written, typically a data frame. If not, it is attempted to create one from it. |
imageid |
integer value; the index of the slide which is considered |
batch |
character string, this refers to the name of a collection of experiments. The default batch name is "output". |
This function writes the data in for each imageid, assigning each file the filename which takes the default form of "output".imageid.spot. The column names of x are written along with x in the table format
Jessica Mar
Spot manual http://www.cmis.csiro.au/iap/Spot/spotmanual.htm
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | ## Setting up the data
## library(Spot)
## SetParameters("mouse")
## Here is what you should see:
## Enter number of rows of grids per image (ngrid.r): 4
## Enter number of columns of grids per image (ngrid.c): 4
## Enter number of rows of spots per grid (nspot.r): 19
## Enter number of columns of spots per grid (nspot.c): 21
## Enter top/bottom translation tolerance, default is 50 (tolerance.r): 20
## Enter left/right translation, default is 50 (tolerance.c): 30
## Initialization complete
##Inputting Image Data
## SetImages("mouse")
## Combining the red and green channels for the first slide
## mouse.array <- Spots("mouse", 1)
## Calling the function to write the data in
## write.spot(mouse.array, 1, "mouse")
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