init.read.exp: Reads the Output of the Computed Statistics
In gnyamundanda/sma: Statistical Microarray Analysis

Description Usage Arguments Value Warning Author(s) References Examples

Function displays the 30 measurements computed by the program Spot for each gene in the slide being considered.

1	init.read.exp(batch, imageid, sep="\t", header=TRUE, ...)

`batch`	batch name of the experiment
`imageid`	integer value; the index of the slide which is considered
`sep`	the field separator character; the columns of the file will be separated by this character.
`header`	a logical value indicating whether the file contains the names of the variables as its first line.
`...`	graphical parameters may also be supplied as arguments to the function (see `par`).

A matrix containing the 30 columns of computed measurements, corresponding to the rows of different genes in the specified slide.
Details regarding these measurements can be found at http://www.cmis.csiro.au/iap/Spot/spotoutput.htm.

The code in the example is not directly executable as it draws upon a particular set of data. This data may be downloaded from http://www.stat.berkeley.edu/users/terry/zarray/Software/smacode.html and when loaded appropriately into the user's directory, this example should be executable in its current form.

Yee Hwa Yang, yeehwa@stat.berkeley.edu

Spot manual http://www.cmis.csiro.au/iap/Spot/spotmanual.htm

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## apoa1.info <- init.read.exp("apoa1", 1) ## obtains the matrix
## of 30 measurements for all the genes spotted on slide 1 of the MouseArray
## experiment.

gnyamundanda/sma documentation built on May 3, 2019, 5:17 p.m.