orderCoefficientsByGene: orderCoefficientsByGene Order model coefficient estimates by...

In gofflab/glmpd: Identification of context-specific drivers of a pattern projection via GLM fitting.

Description

orderCoefficientsByGene Order model coefficient estimates by genes, such as for visualization by heatmap

Usage

orderCoefficientsByGene(
  pattern_coefficient_list,
  model_terms_to_keep = NULL,
  filter_significance,
  string
)

Arguments

pattern_coefficient_list	List (over patterns) of objects returned from extractCoefficients(), or "summarized_result" option of fit_models_cds().
model_terms_to_keep	optional. limit returned dataframe to coefficients of interest.
filter_significance	optional. Numeric value at which to filter q-value significance. Genes with signficant coefficients for one or more terms are returned. If not provided, all genes returned.
string	optional. all model terms that contain this string will be used for signficance filtering.

Value

Returns a list of fitted models (output similar to monocle3::fit_model)

gofflab/glmpd documentation built on April 11, 2021, 6:38 a.m.