organizeEstimates: organizeEstimates Generate matrices of coefficients of...

In gofflab/glmpd: Identification of context-specific drivers of a pattern projection via GLM fitting.

Description

organizeEstimates Generate matrices of coefficients of interest for later plotting with heatmaps.

Usage

organizeEstimates(
  coefficients_list,
  terms_exact,
  terms_match,
  feature = "estimate",
  gene_name = "gene_id",
  transpose = F
)

Arguments

coefficients_list	List (over patterns) of objects returned from orderCoefficientByGene()
terms_exact	String. Names of terms to plot which exactly match the terms of the model.
terms_match	String. specify beginning string to match terms to plot. Necessary for interaction terms.
feature	which feature to pull from the model. Default ["estimate"] is beta. Options include "q_value"...
gene_name	name of column which contains gene names. Default ["gene_id"]
tranpose	boolean. Should matrices be tranposed. Default [F] returns genes as rows.

Value

Returns a list of matrices.

gofflab/glmpd documentation built on April 11, 2021, 6:38 a.m.