diamond_blastp: Diamond BLASTp Client

In gotoolchest/toolchest-client-r: R Client for Toolchest

Diamond BLASTp Client

Description

Runs Diamond in BLASTp mode via Toolchest.

Usage

diamond_blastp(
  tool_args = "",
  inputs,
  output_path = NULL,
  output_primary_name = NULL,
  ...
)

Arguments

tool_args	Additional arguments to be passed to Diamond BLASTp.
inputs	Path to a file that will be passed in as input. FASTA or FASTQ formats are supported (it may be gzip compressed)
output_path	(optional) (optional) Path to directory where the output file(s) will be downloaded. Log file (diamond.log) will be downloaded in the same directory as the out file(s).
output_primary_name	(optional) Base name of output file.
is_async	(optional) Whether to run a job asynchronously. Defaults to false.

Value

Reference to an object with output location data.

gotoolchest/toolchest-client-r documentation built on July 14, 2022, 7 a.m.