update_database: Update Database

In gotoolchest/toolchest-client-r: R Client for Toolchest

Update Database

Description

Updates a custom database. The new database version is returned immediately after initialization.

Usage

update_database(database_path, tool, database_name, ...)

Arguments

database_path	Path or list of paths (local or S3) to be passed in as inputs.
tool	Toolchest tool with which you use the database (e.g. 'toolchest$tools$Kraken2“).
database_name	Name of the new database.

Details

This executes just like any other tool, except:

• the success status is complete instead of ready_to_transfer_to_client

• is_async is True by default

Note that it may take 24-48 hours for the custom database to be ready for use.

gotoolchest/toolchest-client-r documentation built on July 14, 2022, 7 a.m.