unicycler | R Documentation |
Runs Unicycler via Toolchest.
unicycler( tool_args = "", read_one = NULL, read_two = NULL, long_reads = NULL, output_path = NULL, ... )
tool_args |
(optional) Additional arguments to be passed to Unicycler. |
read_one |
Path of input file (FASTQ) to be passed in as Read 1 (-1). |
read_two |
Path of input file (FASTQ) to be passed in as Read 2 (-2). |
long_reads |
Path of input file (FASTA) to be passed in as long reads (-l). |
output_path |
(optional) Path to a directory where the output file(s) will be downloaded. |
is_async |
(optional) Whether to run a job asynchronously. Defaults to false. |
Reference to an object with output location data.
If some but not all of read_one
, read_two
, or long_reads
are
unspecified, Toolchest will assume that they are intended to be blank.
If all are left blank, the user will be prompted to provide input file(s)
and option(s).
At least one input filepath is needed for Toolchest to run Unicycler.
If output_path
is left unspecified, downloading will be skipped.
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