API for gpovysil/cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS data
| Global functions | |
|---|---|
| .cn.mopsC | Source code |
| .cn.mopsCE | Source code |
| .convertToFastSegRes | Source code |
| .makeLogRatios | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .referencecn.mops | Source code |
| .replaceNames | Source code |
| .segPlot | Source code |
| .segmentation | Source code |
| .singlecn.mops | Source code |
| .statmod | Source code |
| CNVDetectionResult | Man page |
| CNVDetectionResult-class | Man page Man page |
| CNVRanges | Man page |
| CnvDetectionResult | Man page |
| X | Man page |
| XRanges | Man page |
| calcFractionalCopyNumbers | Man page |
| calcFractionalCopyNumbers,CNVDetectionResult-method | Man page Man page |
| calcIntegerCopyNumbers | Man page |
| calcIntegerCopyNumbers,CNVDetectionResult-method | Man page Man page |
| cn.mops | Man page Source code |
| cnvdetectionresult | Man page |
| cnvr | Man page |
| cnvr,CNVDetectionResult-method | Man page Man page |
| cnvs | Man page |
| cnvs,CNVDetectionResult-method | Man page Man page |
| exomeCounts | Man page |
| exomecn.mops | Man page Source code |
| getReadCountsFromBAM | Man page Source code |
| getSegmentReadCountsFromBAM | Man page Source code |
| gr | Man page |
| gr,CNVDetectionResult-method | Man page Man page |
| haplocn.mops | Man page Source code |
| haplocn.mopsC | Source code |
| haplocn.mopsCE | Source code |
| individualCall | Man page |
| individualCall,CNVDetectionResult-method | Man page Man page |
| iniCall | Man page |
| iniCall,CNVDetectionResult-method | Man page Man page |
| integerCopyNumber | Man page |
| integerCopyNumber,CNVDetectionResult-method | Man page Man page |
| localAssessments | Man page |
| localAssessments,CNVDetectionResult-method | Man page Man page |
| makeRobustCNVR | Man page |
| makeRobustCNVR,CNVDetectionResult-method | Man page Man page |
| normalizeChromosomes | Man page Source code |
| normalizeGenome | Man page Source code |
| normalizedData | Man page |
| normalizedData,CNVDetectionResult-method | Man page Man page |
| params | Man page |
| params,CNVDetectionResult-method | Man page Man page |
| plot,CNVDetectionResult,missing-method | Man page |
| plot-methods | Man page |
| posteriorProbs | Man page |
| posteriorProbs,CNVDetectionResult-method | Man page Man page |
| referencecn.mops | Man page Source code |
| sampleNames | Man page |
| sampleNames,CNVDetectionResult-method | Man page Man page |
| segment | Man page Source code |
| segmentation | Man page |
| segmentation,CNVDetectionResult-method | Man page Man page |
| segplot | Man page |
| segplot,CNVDetectionResult-method | Man page Man page |
| show,CNVDetectionResult-method | Man page |
| show-methods | Man page |
| singlecn.mops | Man page Source code |
