kdetrees.complete: Complete kdetrees analysis convenience function

In grady/kdetrees: Nonparametric method for identifying discordant phylogenetic trees

Description

Performs a complete kdetrees analysis, starting with reading trees from a newick file on disk, and writing result files to the working directory. Names and location of output files may be controlled by optional arguments.

Usage

kdetrees.complete(infile, ..., treeoutfile = "outliers.tre",
  csvfile = "results.csv", plotfile = "plot.png", histfile = "hist.png")

Arguments

infile	newick file with trees
...	additional parameters for kdetrees
treeoutfile	write outlier trees in newick format to this file
csvfile	write density results to this file
plotfile	print scatterplot of results to this file
histfile	print histogram of density estimates to this file

Value

result of kdetrees call

Author(s)

Grady Weyenberg

grady/kdetrees documentation built on May 17, 2019, 8:01 a.m.