as.data.frame.kdetrees: Convert kdetrees object to data.frame

In grady/kdetrees: Nonparametric method for identifying discordant phylogenetic trees

Description

Converts a kdetrees object to a data.frame suitable for saving as output. It contains the density estimates for each tree, a Boolean value indicating if the tree was selected as an outlier, and optionally the newick string corresponding to the tree.

Usage

## S3 method for class 'kdetrees'
as.data.frame(x, row.names, optional, trees = NULL, ...)

Arguments

x	kdetrees object to be converted
row.names	ignored
optional	ignored
trees	If given the original list of trees, will convert to newick and add a column to the output
...	unused

Value

a data.frame

Author(s)

Grady Weyenberg

Examples

result <- kdetrees(apicomplexa, outgroup="Tt")
as.data.frame(result)

grady/kdetrees documentation built on May 17, 2019, 8:01 a.m.