Man pages for graeberlab-ucla/glab.library
Data Analysis Functions

calc.iCNA.breakpoints	calc.iCNA.breakpoints
calculate_signature_scores	calculate signature scores
gsea_squared	#GSEA-squared (last mod. 07/2019 ksheu)
intersect_all	Intersects all lists
intersect_doPCA_from_file_and_project_second_dataset	PCA from file and project second dataset
ladder.plot	ladder plot with ks p-value
ladder.plot.with.transparent.lines	ladder.plot.with.transparent.lines
PCA_from_file	PCA from file
plot_cca_loadings	Title: Plot regularized canonical correlation analysis...
plot_pca	Plot PCA
plot_pca_gradient_fill	Plot PCA Gradient Fill
plot_pca_gradient_fill_missingGrey90	Plot PCA Gradient Fill
plot_pca_gradient_fill_repel	Plot PCA Gradient Fill
plot_pca_paint_crispr	Plot PCA Paint Crispr
plot_pca_paint_crispr_repel	Plot PCA Paint Crispr
plot_pca_paint_gene	Plot PCA Paint Gene
plot_pca_paint_gene_on_crispr	Plot PCA Paint Gene on Crispr
plot_pca_paint_gene_repel	Plot PCA Paint Gene
plot_pca_paint_vector	Plot PCA Paint Crispr
plot_pca_projection	Plot PCA projection and data points from original PCA
plot_pca_projection_labeloptions	Plot PCA projection and data points from original PCA
plot_pca_repel	Plot PCA
plot_pls	Plot PLS
plot_pls_varimax	Plot PLS
plot_varimax	Plot varimax PCA
plot_varimax_gradient_fill	Plot varimax PCA
plot_varimax_paint_gene	Plot varimax PCA Paint Gene
plot_varimax_shape	Plot varimax PCA
plot_varimax_shape_size	Plot varimax PCA
PLSR_from_file	Partial Least Squares Regression from file Last mod: 3/17/20,...
PLSR_from_file_and_predict_second_dataset	Partial Least Squares and predict second dataset
run_cca	Run regularized canonical correlation analysis edited from...
run.enrichR	run.enrichR
spinning_3d_pca_link	Plot PCA scores in 3d space. Link to locally saved 3d html...
varimax_from_file	Varimax rotation from file Last mod: 4/2018, ksheu