calculate_signature_scores: calculate signature scores

In graeberlab-ucla/glab.library: Data Analysis Functions

calculate signature scores

Description

Reads file with samples in columns and variables in rows, and geneset list. Calculates sum z-score signatures across provided samples, and writes to file Returns dataframe of signature scores

Usage

calculate_signature_scores(
  file,
  geneset,
  info.name = NA,
  info.type = NA,
  plot.title = "Signature scores"
)

Arguments

file	Filepath/filename of expression data matrix
geneset	geneset vector
info.name	sample info for plotting if needed
info.type	sample info for plotting if needed
plot.title	plot title

graeberlab-ucla/glab.library documentation built on Oct. 28, 2024, 10:48 a.m.