PLSR_from_file: Partial Least Squares Regression from file Last mod: 3/17/20,...

In graeberlab-ucla/glab.library: Data Analysis Functions

Partial Least Squares Regression from file Last mod: 3/17/20, ksheu

Description

Writes out Xscores, Xloadings, and PVE. Plot scores output with plot_pls()

Usage

PLSR_from_file(
  file,
  sample.names,
  sample.type,
  y.response,
  title = "PLSR",
  comps = 5,
  scale = F,
  comp.x = "comp.1",
  comp.y = "comp.2",
  labels = F,
  fread = F
)

Arguments

file	file for X matrix
sample.names	vector of names of the samples
sample.type	vector of sample groups
y.response	numeric vector of response values in same order as samples
title	title of the plot
comps	number of components to compute
scale	default=F
comp.x, comp.y	comps to display
labels	label the plot, default = F
fread	default = F

graeberlab-ucla/glab.library documentation built on Oct. 28, 2024, 10:48 a.m.