ladder.plot: ladder plot with ks p-value

In graeberlab-ucla/glab.library: Data Analysis Functions

ladder plot with ks p-value

Description

ladder plot with ks p-value

Usage

ladder.plot(z, title, metric, ladder_color, cex = 1.5, latexpdf_flag = 0)

Arguments

z	dataframe with list of genes (or similar) and metrics that can be used to rank the genes, and indication of the geneset membership based on the gene color (column with colname="color"; any color = member, "trnasparent" = non-member)
title	title for the plot, typically the name/description of the gene set used for the enrichment analysis
metric	parameter indicating the metric (column name) in dataframe z to be used to rank genes
cex	character enhancement factor - scales the font size
latexpdf_flag	used to create a formated pdf version of the genes or samples that make up the ladder rungs only turn latexpdf_flag on if latexpdf is installed and working

Value

RVAL

Examples

provided below the functions, at the end of the file

graeberlab-ucla/glab.library documentation built on Oct. 28, 2024, 10:48 a.m.