GMS_v4-class: Class GMS_v4

In griffithlab/GenVisR: Genomic Visualizations in R

Class GMS_v4

Description

An S4 class to represent data in gms annotation version 4, inherits from the GMS_Virtual class.

Usage

GMS_v4(gmsData)

Arguments

gmsData

data.table object containing a gms annotation file conforming to the version 4 specifications.

Slots

position

data.table object containing column names "chromosome_name", "start", "stop".

mutation

data.table object containing column names "reference", "variant", "trv_type".

sample

data.table object containing columns names "sample".

meta

data.table object containing meta data.

griffithlab/GenVisR documentation built on April 18, 2024, 7:06 p.m.