MutationAnnotationFormat-class: Class MutationAnnotationFormat

In griffithlab/GenVisR: Genomic Visualizations in R

Class MutationAnnotationFormat

Description

An S4 class acting as a container for MutationAnnotationFormat version sub-classes, under development!!!

Usage

MutationAnnotationFormat(path, version = "auto", verbose = FALSE)

Arguments

path	String specifying the path to a MAF file.
version	String specifying the version of the MAF file, if set to auto the version will be obtained from the header in the MAF file.
verbose	Boolean specifying if progress should be reported while reading in the MAF file.

Slots

path

Character string specifying the path of the MAF file read in.

version

Numeric value specifying the version of the MAF file.

mafObject

MutationAnnotationFormat object which inherits from MutationAnnotationFormat_Virtual class.

See Also

Waterfall

MutSpectra

griffithlab/GenVisR documentation built on May 14, 2024, 12:40 a.m.