MutationAnnotationFormat_v2.2-class: Class MutationAnnotationFormat_v2.2

In griffithlab/GenVisR: Genomic Visualizations in R

Class MutationAnnotationFormat_v2.2

Description

An S4 class to represent data in mutation annotation format version 2.2, inherits from the MutationAnnotationFormat_Virtual class.

Usage

MutationAnnotationFormat_v2.2(mafData)

Arguments

mafData

data.table object containing a maf file conforming to the version 2.2 specification.

Slots

position

data.table object containing column names "Chromosome", "Start_Position", "End_Position, "Strand".

mutation

data.table object containing column names "Variant_Classification", "Variant_Type", "Reference_Allele", "Tumor_Seq_Allele1", "Tumor_Seq_Allele2".

sample

data.table object containing columns names "Tumor_Sample_Barcode".

meta

data.table object containing meta data.

griffithlab/GenVisR documentation built on May 14, 2024, 12:40 a.m.