VEP_v88-class: Class VEP_v88

In griffithlab/GenVisR: Genomic Visualizations in R

Class VEP_v88

Description

An S4 class to represent data in variant effect predictor version 88 format, inherits from the VEP_Virtual class, under development!!!

Usage

VEP_v88(vepData, vepHeader)

Arguments

vepData	data.table object containing a VEP annotation file conforming to the version 88 specifications.
vepHeader	Object of class list containing character vectors for vep header information.

Slots

header

data.table object containing header information

description

data.table object containing column descriptions

position

data.table object containing column names "chromosome_name", "start", "stop".

mutation

data.table object containing column names "reference", "variant", "trv_type".

sample

data.table object containing columns names "sample".

meta

data.table object containing meta data.

griffithlab/GenVisR documentation built on May 14, 2024, 12:40 a.m.