Man pages for grybnicky/Spacer2PAM
An R Package for Predicting CRISPR System Protospacer Adjacent Motifs from CRISPR Array Spacer Sequences
| alignmentCSV2DF | Convert an Alignment CSV from BLAST to a Dataframe |
| df2fasta | Convert a Spacer Dataframe to a FASTA file |
| FASTA2AlignmentDF | Submit spacer FASTA to BLAST and format the results |
| fasta2df | Convert a FASTA of Spacers to a Dataframe |
| join2PAM | Predict Protospacer Adjacent Motifs from Joined Spacer and... |
| joinSpacerDFandAlignmentDF | Join Spacer and Alignment Dataframes |
| setCRISPRInfo | Set the Name of the CRISPR System |
| submit2Phaster | Submits Alignment Hits for Prophage Prediction |
