joinSpacerDFandAlignmentDF: Join Spacer and Alignment Dataframes

In grybnicky/Spacer2PAM: An R Package for Predicting CRISPR System Protospacer Adjacent Motifs from CRISPR Array Spacer Sequences

Join Spacer and Alignment Dataframes

Description

This function allows you to join a dataframe containing the CRISPR array spacer information with a dataframe containing the results of the BLAST alignment. Produces a dataframe with the same number of rows as the alignment dataframe and the spacer information added as additional columns. This function also takes the accession numbers for the alignment and adds a column with the Taxa IDs and organism name. Taxa IDs

Usage

joinSpacerDFandAlignmentDF(alignmentDF, spacerDF, accessionDatabaseLocation)

Arguments

alignmentDF	The dataframe containing the CRISPR array spacer information.
spacerDF	The dataframe containing the spacer alignment information.
accessionDatabaseLocation	The location of your Taxonomizer SQL database.

Examples

joinSpacerDFandAlignmentDF(alignmentDF = yourAlignmentDataframe, spacerDF = yourSpacerDataframe, accessionDatabaseLocation = "theLocationOfYourTaxonomizerDatabase")

grybnicky/Spacer2PAM documentation built on Jan. 30, 2023, 2:55 a.m.