FASTA2AlignmentDF: Submit spacer FASTA to BLAST and format the results
In grybnicky/Spacer2PAM: An R Package for Predicting CRISPR System Protospacer Adjacent Motifs from CRISPR Array Spacer Sequences
View source: R/FASTA2AlignmentDF.R
FASTA2AlignmentDF R Documentation
Submit spacer FASTA to BLAST and format the results
Description
This function allows you to programatically submit your spacer FASTA to BLAST and retrieve the results. The results are then parsed and formatted for use with the joinSpacerDFandAlignmentDF function.
Usage
FASTA2AlignmentDF(FASTAfile)
Arguments
FASTAfile
The file location of the FASTA you want to submit to BLAST.
Examples
FASTA2AlignmentDF()
grybnicky/Spacer2PAM documentation built on Jan. 30, 2023, 2:55 a.m.
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View source: R/FASTA2AlignmentDF.R
| FASTA2AlignmentDF | R Documentation |
Submit spacer FASTA to BLAST and format the results
Description
This function allows you to programatically submit your spacer FASTA to BLAST and retrieve the results. The results are then parsed and formatted for use with the joinSpacerDFandAlignmentDF function.
Usage
FASTA2AlignmentDF(FASTAfile)
Arguments
FASTAfile |
The file location of the FASTA you want to submit to BLAST. |
Examples
FASTA2AlignmentDF()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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