setCRISPRInfo: Set the Name of the CRISPR System

In grybnicky/Spacer2PAM: An R Package for Predicting CRISPR System Protospacer Adjacent Motifs from CRISPR Array Spacer Sequences

Set the Name of the CRISPR System

Description

This function allows you to set the genus, species, and strain of the organism that encodes the CRISPR system. It also sets a unique identifier for the CRISPR system as there can be multiple per organism. These values will be used by other functions to name files.

Usage

setCRISPRInfo(genus, species, strain, crisprSystemNumber)

Arguments

genus	A string value that indicates the genus name of the organism encoding the CRISPR array. Make sure to capitalize the first letter of the genus name.
species	A string value that indicates the species name of the organism encoding the CRISPR array. Make sure not to capitalize the first letter of the species name.
strain	A string value that indicates the strain name of the organism encoding the CRISPR array.
crisprSystemNumber	A string value that will act as an identifier to distinguish multiple CRISPR systems in the same organism.

Examples

Given a CRISPR system in Bacillus halodurans C-125 that you designate as "1", you would enter:
setCRISPRInfo(genus = "Bacillus", species = "halodurans", strain = "C-125", crisprSystemNumber = "1")

grybnicky/Spacer2PAM documentation built on Jan. 30, 2023, 2:55 a.m.