eag_table: Class: eag_tbl

In gschofl/HLAsim: Simulate allelic dropouts in HLA data

Description

Constructor for an <eag_tbl> object.

THIS FUNCTION REQURIES ACCESS TO INTERNAL DATABASES AT DKMS LSL.

Use the prepackaged datasets (eag_tables) instead.

Usage

eag_table(gene = "DPB1", nextype_basis_id = "1412")

Arguments

gene	An HLA gene. One of ‘A’, ‘B’, ‘C’, ‘DRB1’, ‘DQB1’, ‘DPB1’.
nextype_basis_id	"NeXtype Basis ID".

Value

A table with the fields:

• "eag_num": Numeric code describing an Exon Allele Group.

• "eag_allele": HLA allele code.

• "exon": Exon '2' or '3'.

• "allele_id": Allele identifier.

and the attributes:

• "nextype_basis_id"

• "gene"

Examples

## Not run: 
dpb1_eag1412 <- eag_table("DPB1", "1412")

## End(Not run)

gschofl/HLAsim documentation built on May 17, 2019, 8:51 a.m.