GenPept Flat Files

accessors	Access the various fields of a GenBank record.
as.gbLocation	Create a 'gbLocation'.
biofiles	_biofiles_ is an R package for interfacing with GenBank or...
dbxref-methods	Access the 'db_xref's of GenBank features
dot-filter	Filter gbFeatures from a FeatureTable
dot-select	Select annotations from a FeatureTable
embl_record	Parser for Embl Records.
end	Get or set the end position of genomic features
extract-methods	Method extensions to extraction operator for gbRecord...
featureTable-methods	Tabulate Genbank features
fuzzy	Has a feature fuzzy locations?
gbFeature-class	Class '"gbFeature"'
gbFeatureTable-class	Class '"gbFeatureTable"'
gbHeader-class	Generator object for the '"gbHeader"' reference class
gbk_record	Parser for GenBank/GenPept records.
gbLocation-class	Class '"gbLocation"'
gbLocus-class	Generator object for the '"gbLocus"' reference class
gbRecord	Read a GenBank/GenPept or Embl format file.
gbRecord-class	Class '"gbRecord"'
gbRecordList-class	Class '"gbRecordList"'
gbReference-class	Generator object for the '"gbReference"' reference class
gbReferenceList-class	Generator object for the '"gbReferenceList"' reference class
geneID	Return the _gene_ qualifiers from GenBank features.
genomeRecordFromNCBI	Fetch genomes from NCBI
getContigSeq	Retrieve the sequence of a contig
getFeatures-methods	Get the feature table from a GenBank record.
getHeader-methods	Extract the header from a '"gbRecord"' object.
getSequence-methods	Get the sequence from a GenBank record.
has_command	Test if an external executable is available
hasKey-methods	Has a feature a specific key?
hasQualif-methods	Has a feature a specific qualifier?
index-methods	Access the indices of GenBank features
key-methods	Get/set keys of GenBank features
length-methods	Get the number of gbFeatures.
linebreak	Format paragraphs
location-methods	Access genomic locations of GenBank features
locusTag	Return the _locus_tag_ qualifiers from GenBank features.
manip-methods	Return a subset of features or annotations from a GenBank...
note	Return the _note_ qualifiers from GenBank features.
pad	Pad a string
product	Return the _product_ qualifiers from GenBank features.
proteinID	Return the _protein_id_ qualifiers from GenBank features.
qualifList-methods	List the names of Genbank qualifiers.
qualif-methods	Get/set qualifiers of GenBank features
qualifTable-methods	Tabulate Genbank qualifiers
ranges	Extract features as '"GRanges"' objects.
revcomp-methods	Reverse-complement features in a GenBank record
saveRecord-methods	Save and load 'gbRecord' objects.
seqinfo-class	Generator object for the '"seqinfo"' reference class
shift	Shift the location of features in a GenBank record
span	Get the span of genomic features.
start	Get or set the start position of genomic features
strand	Get or set the strand information of genomic features
summary-methods	Summarise a GenBank record.
translation	Return the _translation_s from GenBank features.
uniqueQualifs	Quickly list all qualifier names.
upstream	Find flanking features.
view-methods	View all features in a 'gbFeatureTable'
write.FeatureTable-methods	Write GenBank records or features to file in Feature Table...
write.GenBank-methods	Write GenBank records or features to file in GenBank format