start: Get or set the start position of genomic features

In gschofl/biofiles: An Interface for GenBank/GenPept Flat Files

Description

Get or set the start position of genomic features

Usage

start(x, ...)

start(x, ...) <- value

## S4 method for signature 'gbLocation'
start(x, join = FALSE)

## S4 replacement method for signature 'gbLocation'
start(x, ...) <- value

## S4 method for signature 'gbFeature'
start(x, join = FALSE)

## S4 replacement method for signature 'gbFeature'
start(x, ...) <- value

## S4 method for signature 'gbFeatureTable'
start(x, join = FALSE)

## S4 replacement method for signature 'gbFeatureTable'
start(x, ...) <- value

## S4 method for signature 'gbRecord'
start(x, join = FALSE)

## S4 method for signature 'gbRecordList'
start(x, join = FALSE)

Arguments

x	A gbFeature, gbFeatureTable, gbRecord, or gbRecordList object.
...	Further arguments passed to methods.
value	The start information to set on x.
join	Join compound genomic locations into a single range.

Value

An integer vector or a list of integer vectors.

See Also

end, strand, span, ranges

Examples

load(system.file("extdata", "marine_metagenome.rda", package = "biofiles"))

## start
start(x)
cds <- x["CDS"]
start(cds)

## `start<-`
start(cds) <- 10
start(cds)

gschofl/biofiles documentation built on Sept. 27, 2020, 12:08 a.m.