BlastReportDB-class: Class '"blastReportDB"'

In gschofl/blastr: A wrapper for NCBI Blast

Description

A reference calss that provides a connection to an SQLite database containing BLAST records organised in three tables:

Details

query with fields:

• query_id INTEGER Primary key

• query_def TEXT

• query_len INTEGER

hit with fields:

• query_id INTEGER

• hit_id INTEGER Primary key

• hit_num INTEGER

• gene_id TEXT

• accession TEXT

• definition TEXT

• length INTEGER

hsp with fields:

• query_id INTEGER

• hit_id INTEGER

• hsp_id INTEGER Primary key

• hsp_num INTEGER

• bit_score FLOAT

• score INTEGER

• evalue FLOAT

• query_from INTEGER

• query_to INTEGER

• hit_from INTEGER

• hit_to INTEGER

• query_frame INTEGER

• query_frame INTEGER

• identity INTEGER

• positive INTEGER

• gaps INTEGER

• align_len INTEGER

• qseq TEXT

• hseq TEXT

• midline TEXT

See Also

The constructors blastReportDB and blastReportDBConnect, and the BLAST classes BlastReport and blastTable.

gschofl/blastr documentation built on May 17, 2019, 8:52 a.m.