coordinates: Access components of High-Scoring Pairs (HSPs)
In gschofl/blastr: A wrapper for NCBI Blast
Description
Usage
Arguments
Value
Description
Extract the position of the start, end, frame, or range of the residues of
query and hit sequences.
Usage
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getQueryFrom(x, max = FALSE)
getQueryTo(x, max = FALSE)
getQueryFrame(x, max = FALSE)
getHitFrom(x, max = FALSE)
getHitTo(x, max = FALSE)
getHitFrame(x, max = FALSE)
getQueryRange(x, max = FALSE)
getHitRange(x, max = FALSE)
Arguments
x
A Hsp or HspList.
max
If TRUE return data only for the hsp with the
highest bit score.
Value
An numeric vector or a list of numeric vectors.
An IRanges object.
gschofl/blastr documentation built on May 17, 2019, 8:52 a.m.
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Description Usage Arguments Value
Description
Extract the position of the start, end, frame, or range of the residues of query and hit sequences.
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | getQueryFrom(x, max = FALSE)
getQueryTo(x, max = FALSE)
getQueryFrame(x, max = FALSE)
getHitFrom(x, max = FALSE)
getHitTo(x, max = FALSE)
getHitFrame(x, max = FALSE)
getQueryRange(x, max = FALSE)
getHitRange(x, max = FALSE)
|
Arguments
x |
A Hsp or HspList. |
max |
If |
Value
An numeric vector or a list of numeric vectors.
An IRanges object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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