blastReportDB: Parse NCBI BLAST XML files into BlastReportDB objects.

In gschofl/blastr: A wrapper for NCBI Blast

Description

Create (or connect to) a blastReport SQLite database.

Usage

blastReportDB(blastfile, db_path = ":memory:", max_hit = NULL,
  max_hsp = NULL, reset_at = 1000, verbose = TRUE)

blastReportDBConnect(db_path)

Arguments

blastfile	an XML BLAST Report.
db_path	Path to an blastReport SQLite database.
max_hit	How many hits should be parsed (default: all available)
max_hsp	How many hsps should be parsed (default: all available)
reset_at	After how many iterations should the parser dump the data into the db before continuing.
verbose	Message if a new database is created.

Value

A BlastReportDB object.

Examples

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gschofl/blastr documentation built on May 17, 2019, 8:52 a.m.