plot.err.two.factor: Plot means and error in group and subgroup

In gtimmerhaus/aquaR: Functions for aquaculture related topics

Description

Plot group data in the background and subgroups in the foreground with mean+/-sterr

Usage

## S3 method for class 'err.two.factor'
plot(data, group1, group2, rect.width = c(-0.3, 0.3),
  at = FALSE, colG1 = "grey", colG2 = "black", err.bars = "sterr",
  cex = 2, shading = FALSE, xlab = "", ylab = "means", length = 0.1,
  lwd = 1, main = "", las.x = 1, las.y = 2, xaxt = T,
  legend.pos = "topright", cex.yaxis = 1, cex.xaxis = 1, yscale = c(1,
  1))

Arguments

data	a numeric vector containing the data to plot.
group1	vector containing the (background) group information for data.
group2	vector containing the sub-group information for data.
rect.width	width of the rectangle of group1
at	optional vector to arrange the position of the data points on the x-axis. Must be integer.
colG1	vector defining the colors for group1. Must have the same length as number of groups.
colG2	vector defining the colors for group2. Must have the same length as number of groups.
err.bars	error bars show standard error ("sterr") or standard deviation ("sd").
cex	defines the size of the dots (means of group2).
shading	intensity (between 1 and 99) of overlay of the background (group1) with a transparent white layer (default FALSE)
xlab	label for x-axis.
ylab	label for y-axis.
length	defines the length of the arrow heads of the error bars
lwd	line width of mean marker (group1) and the error bars (group2).
main	title of the plot
las.x	text orientation of the x-axis labels.
las.y	text orientation of the y-axis labels.
xaxt	add x-axis if TRUE
legend.pos	postion of legend (for group2)
cex.yaxis	scaling for y-axis labels
cex.xaxis	scaling for x-axis labels
yscale	vector of length two to scale the ylim's upper and lower limit

Examples

plot.err.two.factor(dat$V, dat$Gr.navn, dat$feed, colG1=cols[3:1], colG2 = cols[6:4], lwd=3, shading=30, at=c(3,2,1))

gtimmerhaus/aquaR documentation built on May 17, 2019, 8:57 a.m.