Man pages for gtsitsiridis/metatranscriptome
Visualization tool for the metatranscriptome project
| clean_tax_table | Deal with NAs |
| createAppDir | create App dir Creates a directory called shiny in... |
| deseq2_table | DESeq2 table |
| diversity_test | Alpha Diversity test |
| generateLineage | Generate Lineage |
| generatePhylo | Generate Phyloseq object |
| getAttributes | Phyloseq attributes |
| globalDA | Global Diversity analysis Compute the alpha diversity of each... |
| globalDE | Global Differential Expression Perform DESeq2 on each group... |
| launch | Launch App |
| loadPhylo | Load phyloseq |
| makeSankey_links | Make Sankey links table |
| mfMeans | Metafeature mean relative abundance table |
| mfPlot | Metafeature plot |
| plot_alpha | Alpha diversity plot |
| plot_diff | DE Boxplot |
| plot_mds | MDS plot |
| plot_sankey | Sankey plot |
| plot_taxa | Taxonomy Bar Chart |
| plot_top_species | Top relative abundance Plot the relative abundance of the... |
| plot_volcano | Volcano plot |
| relativeCounts | Relative Counts |
| taxids2names | TaxID to Species Transforms taxID to the corresponding... |
| transformData | Transform Data Convert tables into input compatible with the... |
