plot_sankey: Sankey plot
In gtsitsiridis/metatranscriptome: Visualization tool for the metatranscriptome project
Description
Usage
Arguments
Value
Description
Plot a sankey diagram.
Usage
1
2
plot_sankey(phylo, source = "Kingdom", target = "Phylum",
level_filter = NULL, source_filter = NULL, normalized = F)
Arguments
phylo
phyloseq object
source
c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species")
target
c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species")
level_filter
c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species")
source_filter
String to filter source values.
normalized
A boolean value indicating, whether the count_table is normalized for sequencing depth.
Value
An intercative sankey plot generated by plotly.
gtsitsiridis/metatranscriptome documentation built on May 17, 2019, 1:33 p.m.
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Description Usage Arguments Value
Description
Plot a sankey diagram.
Usage
1 2 | plot_sankey(phylo, source = "Kingdom", target = "Phylum",
level_filter = NULL, source_filter = NULL, normalized = F)
|
Arguments
phylo |
phyloseq object |
source |
|
target |
|
level_filter |
|
source_filter |
String to filter |
normalized |
A boolean value indicating, whether the count_table is normalized for sequencing depth. |
Value
An intercative sankey plot generated by plotly.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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