Man pages for hanasusak/cDriver
Find best driver candidate genes
| all.genes.lengths | Coding genes length by Ensamble, length is calculated as sum... |
| bayes.driver | Bayesina risk inference model. |
| bayes.risk | Bayesina risk inference model. |
| bcgr | Background mutation rate calculated based on the observed... |
| bcgr.combine | Combining two somatic background mutation probability values... |
| bcgr.lawrence | Background mutation rate based on Lawrence's background... |
| boxplotCCF.mutations | Plot boxplot of mutations for top genes. |
| boxplotCCF.patients | Plot boxplot of patients mutations CCF's for top genes. |
| CCF | Calculation of Cancer Cell Fraction (CCF) for SNVs from... |
| cDriver | cDriver. |
| combine.ranking | Combining mulitple methods for ranking genes. |
| cutoff.driver | Calculation of suggested cut off for bayesian risk model |
| cutoff.risk | Calculation of suggested cut off for bayesian risk model |
| driver.genes.concensus | Vector of genes which are considered as common cancer... |
| lawrence.df | Lawrence's paper information |
| length.genes | Genes length by NCBI, length which was covered by sequencing, |
| plotMutChange | Plot mutations pattern frequncies. |
| plotSamplesMut | Plot mutations per sample distribution. |
| plotStaircase | Plot heatmap for genes-sample pairs . |
| sample.genes.mutect | CLL MAF like file |
