length.genes: Genes length by NCBI, length which was covered by sequencing,

In hanasusak/cDriver: Find best driver candidate genes

Description

This data frame containts information about genes length. There is 16485 rows and each row represents gene. This set of genes were analysed as part of CLL somatic driver genes at CRG and ICGC. Rownames are Hugo symbols for genes. They were corrected to most recent used Hugo gene name. Data frame has 5 columns.

Usage

length.genes

Format

data frame

Variables

• Hugo_Symbol same as rowname. Hugo symbol as unique indentifier for genes.

• Coverd_len length of the gene which was coverd by sequncing CLL project.

• Length length of genes reported in NCBI

• procentege which was covered of total gene (Coverd_len / Length)

• p_by_len probability that gene get one mutation, if each base pair had same chance; Coverd_len/sum(length.genes$Coverd_len)

hanasusak/cDriver documentation built on May 17, 2019, 2:27 p.m.