sample.genes.mutect: CLL MAF like file

In hanasusak/cDriver: Find best driver candidate genes

Description

This data frame containts information about SNVs and InDels that are reported as part of CLL project. There is 7860 rows and each row represents annotated SNV/InDel reported in one of 337 patients with CLL. These are filtered SNVs and InDels for segmental duplication, exonix or splicing, intersection of used kits region, etc. They follow MAF like format with additional columns like ploidy, CCF_CNV, etc. Data frame has 23 columns.

Usage

sample.genes.mutect

Format

data frame

Variables

• Chromosome

• Start_Position

• Reference_Allele

• Tumor_Seq_Allele2

• Hugo_Symbol

• Tumor_Sample_Barcode

• VAF

• Function.Refseq

• ExonicFunction.Refseq

• ...

• ploidy

• CCF_CNV

• Damege_score

• gender

• Variant_Classification

• Variant_Type

hanasusak/cDriver documentation built on May 17, 2019, 2:27 p.m.