API for hansenlab/bnbc
Bandwise normalization and batch correction of Hi-C data
| Global functions | |
|---|---|
| ContactGroup | Man page Source code |
| ContactGroup-class | Man page |
| [,ContactGroup,ANY,ANY,ANY-method | Man page |
| `band<-` | Source code |
| `contacts<-` | Source code |
| band | Man page Source code |
| band<- | Man page |
| bandLevelBatchVars | Source code |
| bnbc | Man page Source code |
| bnbc-package | Man page |
| boxSmoother | Man page Source code |
| cg2bedgraph2 | Man page |
| cgApply | Man page Source code |
| cgBandApply | Man page Source code |
| cgEx | Man page |
| colData,ContactGroup-method | Man page |
| colData<-,ContactGroup,DataFrame-method | Man page |
| contacts | Man page Source code |
| contacts<- | Man page |
| dim,ContactGroup-method | Man page |
| distanceIdx | Man page Source code |
| dropGroupZeros | Man page Source code |
| gaussSmoother | Man page Source code |
| getBandIdx | Man page Source code |
| getBandIdxC | Source code |
| getBandMatrix | Man page Source code |
| getChrCGFromCools | Man page Source code |
| getChrIdx | Man page Source code |
| getGenomeIdx | Man page |
| getGroupZeros | Man page Source code |
| getSeq | Source code |
| idxSwap | Source code |
| librarySize | Man page Source code |
| logCPM | Man page Source code |
| replace | Source code |
| rowData,ContactGroup-method | Man page |
| rowData<-,ContactGroup-method | Man page |
| show,ContactGroup-method | Man page |
| updateBand | Source code |
| updateBands | Source code |
