groupZeros: Group Zero Operations
In hansenlab/bnbc: Bandwise normalization and batch correction of Hi-C data
groupZeros R Documentation
Group Zero Operations
Description
These functions find and remove rows in the set of contact matrices
for which all elements in the row are 0 in all samples.
Usage
getGroupZeros(cg)
dropGroupZeros(cg, g0s)
Arguments
cg
A ContactGroup object.
g0s
A list of elements identified as group zeros.
Details
Group zeros are those rows for which all elements of the row in all
samples are 0. These can impact estimation of features such as A/B
compartment status and so should be removed for many analyses.
Value
A ContactGroup object with the group zeros removed from all rows in
all contact matrices.
See Also
ContactGroup
Examples
data(cgEx)
g0s <- getGroupZeros(cgEx)
cgEx <- dropGroupZeros(cgEx, g0s)
hansenlab/bnbc documentation built on Feb. 4, 2024, 7:20 a.m.
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| groupZeros | R Documentation |
Group Zero Operations
Description
These functions find and remove rows in the set of contact matrices for which all elements in the row are 0 in all samples.
Usage
getGroupZeros(cg)
dropGroupZeros(cg, g0s)
Arguments
cg |
A ContactGroup object. |
g0s |
A list of elements identified as group zeros. |
Details
Group zeros are those rows for which all elements of the row in all samples are 0. These can impact estimation of features such as A/B compartment status and so should be removed for many analyses.
Value
A ContactGroup object with the group zeros removed from all rows in all contact matrices.
See Also
ContactGroup
Examples
data(cgEx)
g0s <- getGroupZeros(cgEx)
cgEx <- dropGroupZeros(cgEx, g0s)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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