Description Format Source References See Also
This is a sample ContactGroup object representing observations on
chr22 from 3 1k Genomes trios' lymphoblastoid cell lines (LCL).
colData(cgEx) gives the cell
line name (
CellLine), the ethnicity of the individual
Population), the family (
Family), the gender
Gender), the relationship of the individuals within a trio
Role), the replicate number (
Tech) and each sample's
These data were generated by the dilution Hi-C method using HindIII (Lieberman-Aiden et al.). Hi-C contact matrices were generated by tiling the genome into 40kb bins and counting the number of interactions between bins.
These data have undergone no preprocessing.
The data is an object of class
Raw data are available from the 4D nucleome data portal (https://data.4dnucleome.org) under accessions 4DNESYUYFD6H, 4DNESVKLYDOH, 4DNESHGL976U, 4DNESJ1VX52C, 4DNESI2UKI7P, 4DNESTAPSPUC, 4DNES4GSP9S4, 4DNESJIYRA44, 4DNESE3ICNE1.
Lieberman-Aiden, E, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009, 326:289-293. doi: 10.1126/science.1181369
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