getBandIdx: Get Band Indices
In hansenlab/bnbc: Bandwise normalization and batch correction of Hi-C data
View source: R/contactGroup_utils.R
getBandIdx R Documentation
Get Band Indices
Description
Get the indices corresponding to a matrix band.
Usage
getBandIdx(n, band.no)
Arguments
n
The number of rows/columns of a contact matrix
band.no
Integer specifying which matrix band. band.no = 1 retrieves
the main diagonal.
Details
This function is used in subsetting contact matrices, primarily in
getBandMatrix. However, users wishing to extract band matrices
directly may find this useful
Value
A matrix with 2 columns and as many rows as entries in the matrix band.
See Also
ContactGroup,
getBandMatrix,
band
Examples
data(cgEx)
b2.idx <- getBandIdx(nrow(cgEx), 2)
hansenlab/bnbc documentation built on Feb. 4, 2024, 7:20 a.m.
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View source: R/contactGroup_utils.R
| getBandIdx | R Documentation |
Get Band Indices
Description
Get the indices corresponding to a matrix band.
Usage
getBandIdx(n, band.no)Arguments
n |
The number of rows/columns of a contact matrix |
band.no |
Integer specifying which matrix band. |
Details
This function is used in subsetting contact matrices, primarily in getBandMatrix. However, users wishing to extract band matrices directly may find this useful
Value
A matrix with 2 columns and as many rows as entries in the matrix band.
See Also
ContactGroup, getBandMatrix, band
Examples
data(cgEx)
b2.idx <- getBandIdx(nrow(cgEx), 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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