API for hansenlab/bnbc
Bandwise normalization and batch correction of Hi-C data

Global functions
ContactGroup Man page Source code
ContactGroup-class Man page
[,ContactGroup,ANY,ANY,ANY-method Man page
band Man page Source code
band<- Man page
bandLevelBatchVars Source code
bnbc Man page Source code
bnbc-package Man page
boxSmoother Man page Source code
cgApply Man page Source code
cgBandApply Man page Source code
cgEx Man page
colData,ContactGroup-method Man page
colData<-,ContactGroup,DataFrame-method Man page
contacts Man page Source code
contacts<- Man page
dim,ContactGroup-method Man page
distanceIdx Man page Source code
dropGroupZeros Man page Source code
gaussSmoother Man page Source code
getBandIdx Man page Source code
getBandIdxC Source code
getBandMatrix Man page Source code
getGroupZeros Man page Source code
getSeq Source code
idxSwap Source code
librarySize Man page Source code
logCPM Man page Source code
replace Source code
rowData,ContactGroup-method Man page
rowData<-,ContactGroup-method Man page
show,ContactGroup-method Man page
updateBand Source code
updateBands Source code
hansenlab/bnbc documentation built on Nov. 22, 2017, 11:10 a.m.