calculate_dPSI: Calculate deltaPSI
In hclimente/scudo: Switch Catcher, Uprooting Differentially-expressed Ones
Description
Usage
Arguments
Value
Description
Calculates the deltaPSI between two conditions. When a subject
has matching samples for the two conditions, that value is taken. Else, the
deltaPSI is compared to the median of the controls.
Usage
1
calculate_dPSI(expression, tx2gene)
Arguments
expression
data.frame with the expression information in long format,
with column names 'gene','sample','tpmCtrl' and 'tpmCase'.
tx2gene
data.frame with two columns, named "transcript" and "gene",
which contains the transcript-gene mapping.
Value
A data.frame with the PSIs per sample and condition, and the
corresponding deltaPSI between conditions.
hclimente/scudo documentation built on May 25, 2019, 5:26 p.m.
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Description Usage Arguments Value
Description
Calculates the deltaPSI between two conditions. When a subject has matching samples for the two conditions, that value is taken. Else, the deltaPSI is compared to the median of the controls.
Usage
1 | calculate_dPSI(expression, tx2gene)
|
Arguments
expression |
data.frame with the expression information in long format, with column names 'gene','sample','tpmCtrl' and 'tpmCase'. |
tx2gene |
data.frame with two columns, named "transcript" and "gene", which contains the transcript-gene mapping. |
Value
A data.frame with the PSIs per sample and condition, and the corresponding deltaPSI between conditions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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