Files in hcnh174/hlsgr

Hiroshima Liver Study Group R Utilities

R/base.R R/dataframes.R R/deseq2.R R/edger.R R/files.R R/genome.R R/hlsgr.R R/kegg.R R/metaboanalyst.R R/metabodiff.R R/metabolomics.R R/mixomics.R R/project.R R/rnaseq-countdata.R R/rnaseq.R R/ropls.R R/salmon.R R/strings.R R/utils-pipe.R R/voom.R R/wgcna.R README.md data-raw/info_lipids_takeda.R data-raw/protein_coding_genes.R data-raw/txdb.R man/DeSeq2Class.Rd man/EdgeRClass.Rd man/HmtMetabolomicsDataClass.Rd man/LimmaVoomClass.Rd man/MetaboAnalystClass.Rd man/MetaboDiffClass.Rd man/MixomicsClass.Rd man/NgsProjectClass.Rd man/RnaSeqCountDataClass.Rd man/RoplsClass.Rd man/SalmonClass.Rd man/TakedaMetabolomicsDataClass.Rd man/WgcnaClass.Rd man/addIdColumn.Rd man/analyzeSalmonDataDeSeq2.Rd man/analyzeSalmonDeSeq2.Rd man/appendValues.Rd man/checkColExists.Rd man/checkFileExists.Rd man/colExists.Rd man/concat.Rd man/containsElement.Rd man/excludeColumns.Rd man/getCountsByGroup.Rd man/getGroupLevels.Rd man/getSamplesByGroup.Rd man/hasColumn.Rd man/hlsgr.Rd man/loadDataFrame.Rd man/loadGroups.Rd man/loadNgsProject.Rd man/loadRuns.Rd man/loadSalmonData.Rd man/loadSalmonSamples.Rd man/loadSamples.Rd man/loadSubjects.Rd man/loadSubreadData.Rd man/lookupGenes.Rd man/makeDeSeq2Table.Rd man/pipe.Rd man/plotChromosomes.Rd man/plotDeSeq2Heatmap.Rd man/plotKeggPathway.Rd man/readSalmonData.Rd man/removeElements.Rd man/saveSalmonData.Rd man/splitFields.Rd man/splitGenes.Rd man/subsetTxi.Rd man/trim.Rd man/writeTable.Rd vignettes/my-vignette.Rmd