MixomicsClass: R6 class for mixomics analysis

In hcnh174/hlsgr: Hiroshima Liver Study Group R Utilities

R6 class for mixomics analysis

Description

R6 class for mixomics analysis

R6 class for mixomics analysis

Methods

Public methods

• MixomicsClass$new()

• MixomicsClass$evaluatePerformance()

• MixomicsClass$plotPerformance()

• MixomicsClass$tune()

• MixomicsClass$getFinalModel()

• MixomicsClass$plotDiablo()

• MixomicsClass$plotIndiv()

• MixomicsClass$plotArrow()

• MixomicsClass$plotVar()

• MixomicsClass$plotCircos()

• MixomicsClass$plotLoadings()

• MixomicsClass$plotNetwork()

• MixomicsClass$plotHeatmap()

• MixomicsClass$clone()

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Method new()

Usage

MixomicsClass$new(result)

Arguments

result

DGE analysis result

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Method evaluatePerformance()

Usage

MixomicsClass$evaluatePerformance()

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Method plotPerformance()

Usage

MixomicsClass$plotPerformance()

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Method tune()

Usage

MixomicsClass$tune()

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Method getFinalModel()

Usage

MixomicsClass$getFinalModel()

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Method plotDiablo()

Usage

MixomicsClass$plotDiablo(ncomp = 1)

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Method plotIndiv()

Usage

MixomicsClass$plotIndiv()

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Method plotArrow()

Usage

MixomicsClass$plotArrow()

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Method plotVar()

Usage

MixomicsClass$plotVar()

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Method plotCircos()

Usage

MixomicsClass$plotCircos()

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Method plotLoadings()

Usage

MixomicsClass$plotLoadings()

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Method plotNetwork()

Usage

MixomicsClass$plotNetwork()

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Method plotHeatmap()

Usage

MixomicsClass$plotHeatmap()

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Method clone()

The objects of this class are cloneable with this method.

Usage

MixomicsClass$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

mixomixs <- MixomicsClass$new(result)

hcnh174/hlsgr documentation built on April 7, 2023, 4:02 p.m.