README.md

In hcnh174/hlsgr: Hiroshima Liver Study Group R Utilities

hlsgr

Hiroshima Liver Study Group R Utilities

git clone https://github.com/hcnh174/hlsgr.git

devtools::install_github("hcnh174/hlsgr")

install devtools

install.packages('devtools') install.packages("roxygen2") install.packages("testthat")

install Rtools

https://cran.rstudio.com/bin/windows/Rtools/

.Renviron PATH="${RTOOLS40_HOME}\usr\bin;${PATH}"

install packages

install.packages('openxlsx') install.packages('pheatmap') install.packages('R.oo')

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("KEGGprofile", update=FALSE)

BiocManager::install("biovizBase", update=FALSE) BiocManager::install("ggbio", update=FALSE) BiocManager::install("tximport", update=FALSE) BiocManager::install("edgeR", update=FALSE) BiocManager::install("DESeq2", update=FALSE)

install.packages("WGCNA")

BiocManager::install('GO.db', update=FALSE)

BiocManager::install('org.Hs.eg.db', update=FALSE)

BiocManager::install('impute', update=FALSE)

BiocManager::install('preprocessCore', update=FALSE)

links and tutorials

https://r4ds.had.co.nz/tibbles.html http://r-pkgs.had.co.nz/tests.html http://r-pkgs.had.co.nz/git.html https://rawgit.com/rstudio/cheatsheets/master/package-development.pdf https://tinyheero.github.io/jekyll/update/2015/07/26/making-your-first-R-package.html https://stackoverflow.com/questions/45044269/how-to-use-data-within-a-function-in-an-r-package https://mastering-shiny.org/ https://community.rstudio.com/t/magrittr-inside-a-package/2033/9 https://community.rstudio.com/t/import-from-magrittr-package/4313 https://stackoverflow.com/questions/27947344/r-use-magrittr-pipe-operator-in-self-written-package https://towardsdatascience.com/creating-r-packages-what-you-need-to-know-2a20233b328a https://travis-ci.org/ https://daattali.gitbooks.io/stat545-ubc-github-io/bit003_api-key-env-var.html

hcnh174/hlsgr documentation built on April 7, 2023, 4:02 p.m.