EdgeRClass: R6 class for EdgeR analysis
In hcnh174/hlsgr: Hiroshima Liver Study Group R Utilities
EdgeRClass R Documentation
R6 class for EdgeR analysis
Description
R6 class for EdgeR analysis
R6 class for EdgeR analysis
Super classes
hlsgr::AbstractBaseClass -> hlsgr::AbstractDifferentialExpressionAnalysisClass -> EdgeRClass
Methods
Public methods
Inherited methods
Method new()
Usage
EdgeRClass$new(dge, samples, groupcol, outdir)
Arguments
groupcolcategory to use for DGE contrasts
outdirdirectory to write DGE results to
Method getResults()
Usage
EdgeRClass$getResults(p = NULL, padj = 0.05, logfc = 1.5)
Method clone()
The objects of this class are cloneable with this method.
Usage
EdgeRClass$clone(deep = FALSE)
Arguments
deepWhether to make a deep clone.
Examples
project <- EdgeRClass$new(salmon, groupcol, outdir)
hcnh174/hlsgr documentation built on April 7, 2023, 4:02 p.m.
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| EdgeRClass | R Documentation |
R6 class for EdgeR analysis
Description
R6 class for EdgeR analysis
R6 class for EdgeR analysis
Super classes
hlsgr::AbstractBaseClass -> hlsgr::AbstractDifferentialExpressionAnalysisClass -> EdgeRClass
Methods
Public methods
Inherited methods
Method new()
Usage
EdgeRClass$new(dge, samples, groupcol, outdir)
Arguments
groupcolcategory to use for DGE contrasts
outdirdirectory to write DGE results to
Method getResults()
Usage
EdgeRClass$getResults(p = NULL, padj = 0.05, logfc = 1.5)
Method clone()
The objects of this class are cloneable with this method.
Usage
EdgeRClass$clone(deep = FALSE)
Arguments
deepWhether to make a deep clone.
Examples
project <- EdgeRClass$new(salmon, groupcol, outdir)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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