SalmonClass: R6 class for importing salmon count data

In hcnh174/hlsgr: Hiroshima Liver Study Group R Utilities

R6 class for importing salmon count data

Description

R6 class for importing salmon count data

R6 class for importing salmon count data

Super classes

hlsgr::AbstractBaseClass -> hlsgr::RnaSeqCountDataClass -> SalmonClass

Methods

Public methods

• SalmonClass$new()

• SalmonClass$save()

• SalmonClass$subset()

• SalmonClass$clone()

Inherited methods

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Method new()

Usage

SalmonClass$new(project, quantdir)

Arguments

project

NgsProjectClass object

quantdir

folder containing salmon quant data

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Method save()

Usage

SalmonClass$save(filename)

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Method subset()

Usage

SalmonClass$subset(samples = NULL, genes = NULL)

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Method clone()

The objects of this class are cloneable with this method.

Usage

SalmonClass$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

project <- SalmonClass$new(project, quantdir)

hcnh174/hlsgr documentation built on April 7, 2023, 4:02 p.m.