R interface to tumopp, a tumor growth simulator in C++

branch-length | Calculate genetic distance with igraph |

coord | Utilities for coordinate values |

demography | Functions for event history |

drivers | Functions to deal with driver mutations |

graph | Functions depending on igraph |

heterogeneity | Evaluate heterogeneity |

hex | Transform coordinates into hexagonal grid |

layout | Layout cell genealogy |

morphology | Extract surface cells with mathematical morphology |

ms | Sprinkle mutations on genealogy |

plot | ggplot for frequency spectrum |

plot-biopsy | Plot capture_rate ~ nsam of biopsy |

plot-igraph | Plot genealogy |

plot-rgl | 3D plotting with rgl |

plot-section | Plot serial sections of 3D tumor |

population | Functions to modify population data.frame |

read | Read TSV files in given directories |

sample | Sample cells from a population |

sample-combn | Sample cells from a population |

summarize | Summarizing functions |

tumopp | Run tumopp |

tumopp-package | tumopp: R interface to tumopp, a tumor growth simulator in... |

vaf | Utilities for variant allele frequency |

write | Utilities for writing files |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.